PyOBO
latest
ensure_path
from_obo_path
from_obonet
get_alts_to_id
get_ancestors
get_definition
get_descendants
get_equivalent
get_filtered_properties_df
get_filtered_properties_mapping
get_filtered_properties_multimapping
get_filtered_relations_df
get_filtered_xrefs
get_hierarchy
get_id_definition_mapping
get_id_multirelations_mapping
get_id_name_mapping
get_id_species_mapping
get_id_synonyms_mapping
get_id_to_alts
get_ids
get_name
get_name_by_curie
get_name_id_mapping
get_ontology
get_primary_curie
get_primary_identifier
get_priority_curie
get_properties
get_properties_df
get_property
get_relation
get_relation_mapping
get_relations_df
get_species
get_subhierarchy
get_synonyms
get_typedef_df
get_version
get_xref
get_xrefs
get_xrefs_df
ground
has_ancestor
has_nomenclature_plugin
has_xref_plugin
is_descendent
iter_nomenclature_plugins
iter_xref_plugins
normalize_curie
run_nomenclature_plugin
run_xref_plugin
Canonicalizer
Obo
OboNormalizer
Reference
Synonym
SynonymTypeDef
Term
TypeDef
PyOBO
Index
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Index
A
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B
|
C
|
D
|
E
|
F
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G
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H
|
I
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L
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M
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N
|
O
|
P
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R
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S
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T
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W
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X
A
all_shortest_paths() (pyobo.Canonicalizer method)
ancestors() (pyobo.Obo method)
append_alt() (pyobo.Term method)
append_parent() (pyobo.Term method)
append_property() (pyobo.Term method)
append_provenance() (pyobo.Term method)
append_relationship() (pyobo.Term method)
append_synonym() (pyobo.Term method)
append_xref() (pyobo.Term method)
auto() (pyobo.Reference class method)
(pyobo.Term class method)
auto_generated_by (pyobo.Obo attribute)
B
bioregistry_link (pyobo.Reference attribute)
bioversions_key (pyobo.Obo attribute)
C
canonicalize() (pyobo.Canonicalizer method)
Canonicalizer (class in pyobo)
cli() (pyobo.Obo class method)
comment (pyobo.TypeDef attribute)
created_by (pyobo.TypeDef attribute)
curie (pyobo.Reference attribute)
cutoff (pyobo.Canonicalizer attribute)
D
data_version (pyobo.Obo attribute)
date_formatted (pyobo.Obo attribute)
default() (pyobo.Reference static method)
definition (pyobo.Term attribute)
(pyobo.TypeDef attribute)
descendants() (pyobo.Obo method)
domain (pyobo.TypeDef attribute)
dynamic_version (pyobo.Obo attribute)
E
ensure_path() (in module pyobo)
extend_parents() (pyobo.Term method)
extend_relationship() (pyobo.Term method)
F
force (pyobo.Obo attribute)
format_version (pyobo.Obo attribute)
from_curie() (pyobo.Reference static method)
(pyobo.Term class method)
(pyobo.TypeDef class method)
from_df() (pyobo.Canonicalizer class method)
from_obo_path() (in module pyobo)
from_obonet() (in module pyobo)
from_text() (pyobo.SynonymTypeDef class method)
from_triple() (pyobo.Term class method)
(pyobo.TypeDef class method)
G
get_alts_to_id() (in module pyobo)
get_ancestors() (in module pyobo)
get_cls_cli() (pyobo.Obo class method)
get_default() (pyobo.Canonicalizer class method)
get_definition() (in module pyobo)
get_descendants() (in module pyobo)
get_equivalent() (in module pyobo)
get_filtered_multixrefs_mapping() (pyobo.Obo method)
get_filtered_properties_df() (in module pyobo)
(pyobo.Obo method)
get_filtered_properties_mapping() (in module pyobo)
(pyobo.Obo method)
get_filtered_properties_multimapping() (in module pyobo)
(pyobo.Obo method)
get_filtered_relations_df() (in module pyobo)
(pyobo.Obo method)
get_filtered_xrefs() (in module pyobo)
get_filtered_xrefs_mapping() (pyobo.Obo method)
get_flat_mapping() (pyobo.Canonicalizer method)
get_hierarchy() (in module pyobo)
get_id_alts_mapping() (pyobo.Obo method)
get_id_definition_mapping() (in module pyobo)
(pyobo.Obo method)
get_id_multirelations_mapping() (in module pyobo)
(pyobo.Obo method)
get_id_name_mapping() (in module pyobo)
(pyobo.Obo method)
get_id_species_mapping() (in module pyobo)
(pyobo.Obo method)
get_id_synonyms_mapping() (in module pyobo)
(pyobo.Obo method)
get_id_to_alts() (in module pyobo)
get_ids() (in module pyobo)
(pyobo.Obo method)
get_metadata() (pyobo.Obo method)
get_name() (in module pyobo)
get_name_by_curie() (in module pyobo)
get_name_id_mapping() (in module pyobo)
get_ontology() (in module pyobo)
get_primary_curie() (in module pyobo)
get_primary_identifier() (in module pyobo)
get_priority_curie() (in module pyobo)
get_properties() (in module pyobo)
(pyobo.Term method)
get_properties_df() (in module pyobo)
(pyobo.Obo method)
get_property() (in module pyobo)
(pyobo.Term method)
get_relation() (in module pyobo)
(pyobo.Obo method)
get_relation_mapping() (in module pyobo)
(pyobo.Obo method)
get_relation_multimapping() (pyobo.Obo method)
get_relations_df() (in module pyobo)
(pyobo.Obo method)
get_relationship() (pyobo.Term method)
get_relationships() (pyobo.Term method)
get_species() (in module pyobo)
(pyobo.Term method)
get_subhierarchy() (in module pyobo)
get_synonyms() (in module pyobo)
get_typedef_df() (in module pyobo)
(pyobo.Obo method)
get_typedef_id_name_mapping() (pyobo.Obo method)
get_url() (pyobo.Reference method)
(pyobo.Term method)
get_version() (in module pyobo)
get_xref() (in module pyobo)
get_xrefs() (in module pyobo)
get_xrefs_df() (in module pyobo)
(pyobo.Obo method)
ground() (in module pyobo)
H
has_ancestor() (in module pyobo)
has_nomenclature_plugin() (in module pyobo)
has_xref_plugin() (in module pyobo)
hierarchy (pyobo.Obo attribute)
holds_over_chain (pyobo.TypeDef attribute)
I
idspaces (pyobo.Obo attribute)
inverse (pyobo.TypeDef attribute)
is_descendant() (pyobo.Obo method)
is_descendent() (in module pyobo)
is_metadata_tag (pyobo.TypeDef attribute)
is_obsolete (pyobo.Term attribute)
is_symmetric (pyobo.TypeDef attribute)
is_transitive (pyobo.TypeDef attribute)
iter_nomenclature_plugins() (in module pyobo)
iter_only (pyobo.Obo attribute)
iter_property_rows() (pyobo.Obo method)
iter_relation_rows() (pyobo.Obo method)
iter_terms() (pyobo.Obo method)
iter_typedef_id_name() (pyobo.Obo method)
iter_xref_plugins() (in module pyobo)
iterate_alt_rows() (pyobo.Obo method)
iterate_alts() (pyobo.Obo method)
iterate_filtered_properties() (pyobo.Obo method)
iterate_filtered_relations() (pyobo.Obo method)
iterate_filtered_relations_filtered_targets() (pyobo.Obo method)
iterate_filtered_xrefs() (pyobo.Obo method)
iterate_flat_mapping() (pyobo.Canonicalizer method)
iterate_id_definition() (pyobo.Obo method)
iterate_id_name() (pyobo.Obo method)
iterate_id_species() (pyobo.Obo method)
iterate_ids() (pyobo.Obo method)
iterate_obo_lines() (pyobo.Obo method)
(pyobo.Term method)
(pyobo.TypeDef method)
iterate_properties() (pyobo.Obo method)
(pyobo.Term method)
iterate_relations() (pyobo.Obo method)
(pyobo.Term method)
iterate_synonym_rows() (pyobo.Obo method)
iterate_synonyms() (pyobo.Obo method)
iterate_xref_rows() (pyobo.Obo method)
iterate_xrefs() (pyobo.Obo method)
L
link (pyobo.Reference attribute)
M
module
pyobo
N
name (pyobo.Obo attribute)
(pyobo.Reference attribute)
namespace (pyobo.Term attribute)
(pyobo.TypeDef attribute)
normalize() (pyobo.OboNormalizer method)
normalize_curie() (in module pyobo)
O
Obo (class in pyobo)
OboNormalizer (class in pyobo)
P
pair (pyobo.Reference attribute)
priority (pyobo.Canonicalizer attribute)
properties_header (pyobo.Obo attribute)
pyobo
module
R
range (pyobo.TypeDef attribute)
Reference (class in pyobo)
registry_id (pyobo.Reference attribute)
relations_header (pyobo.Obo attribute)
run_nomenclature_plugin() (in module pyobo)
run_xref_plugin() (in module pyobo)
S
set_species() (pyobo.Term method)
single_source_shortest_path() (pyobo.Canonicalizer method)
specificity (pyobo.Synonym attribute)
(pyobo.SynonymTypeDef attribute)
static_version (pyobo.Obo attribute)
Synonym (class in pyobo)
synonym_typedefs (pyobo.Obo attribute)
SynonymTypeDef (class in pyobo)
T
Term (class in pyobo)
to_dict() (pyobo.Reference method)
to_obo() (pyobo.Synonym method)
(pyobo.SynonymTypeDef method)
to_obonet() (pyobo.Obo method)
type (pyobo.Synonym attribute)
TypeDef (class in pyobo)
typedefs (pyobo.Obo attribute)
W
write_default() (pyobo.Obo method)
write_obo() (pyobo.Obo method)
write_obonet_gz() (pyobo.Obo method)
X
xrefs_header (pyobo.Obo attribute)
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