PyOBO
Getting Started
Installation
Command Line Interface
Reference
Functions
build_ontology
default_reference
ensure_path
from_obo_path
from_obonet
get_alts_to_id
get_ancestors
get_children
get_definition
get_descendants
get_edges
get_edges_df
get_filtered_properties_df
get_filtered_properties_mapping
get_filtered_properties_multimapping
get_filtered_relations_df
get_filtered_xrefs
get_graph
get_graph_embeddings_df
get_grounder
get_hierarchy
get_id_definition_mapping
get_id_multirelations_mapping
get_id_name_mapping
get_id_species_mapping
get_id_synonyms_mapping
get_id_to_alts
get_ids
get_literal_mappings
get_literal_mappings_df
get_literal_mappings_subset
get_literal_properties
get_literal_properties_df
get_mappings_df
get_metadata
get_name
get_name_by_curie
get_name_id_mapping
get_object_properties
get_object_properties_df
get_obsolete
get_ontology
get_primary_curie
get_primary_identifier
get_primary_reference
get_properties
get_properties_df
get_property
get_references
get_relation
get_relation_mapping
get_relations_df
get_scispacy_entities
get_scispacy_entity_linker
get_scispacy_knowledgebase
get_semantic_mapping_metadata
get_semantic_mappings
get_species
get_sssom_df
get_subhierarchy
get_synonyms
get_text_embedding
get_text_embedding_similarity
get_text_embeddings_df
get_typedef_df
get_version
get_xref
get_xrefs
get_xrefs_df
ground
has_ancestor
has_nomenclature_plugin
is_descendent
iter_nomenclature_plugins
iter_nomenclature_plugins()
run_nomenclature_plugin
Classes
Class Inheritance Diagram
Functions
Classes
Class Inheritance Diagram
Functional OWL
Named Entity Recognition
ScispaCy Integration
PyOBO
Reference
iter_nomenclature_plugins
View page source
iter_nomenclature_plugins
iter_nomenclature_plugins
(
)
[source]
Get all modules in the PyOBO sources.
Return type
:
Iterable[
Obo
]