IterHelperHelperDict

typeddict IterHelperHelperDict[source]

Represents arguments needed when iterating over all ontologies.

The explicitly defind arguments in this typed dict are used for the loop function iter_helper_helper() and the rest that are inherited get passed to pyobo.get_ontology() in each iteration.

Required Keys:

  • use_tqdm (bool) – Should a progress bar be used?

  • skip_below (Optional[str]) – Skip all prefixes lexicographically sorted below the given prefix

  • skip_pyobo (bool) – If true, skips prefixes that are ontologized as sources in PyOBO

  • skip_set (Optional[set[str]]) – An enumerated set of prefixes to skip

  • strict (bool) – Should strict identifier parsing be enabled?

  • force (bool) – Should re-download and re-processing be forced?

  • force_process (bool) – Should re-processing be forced?