DatabaseKwargs

typeddict DatabaseKwargs[source]

Keyword arguments for database CLI functions.

Required Keys:

  • strict (bool) – Should strict identifier parsing be enabled?

  • force (bool) – Should re-download and re-processing be forced?

  • force_process (bool) – Should re-processing be forced?

  • use_tqdm (bool) – Should a progress bar be used?

  • skip_below (Optional[str]) – Skip all prefixes lexicographically sorted below the given prefix

  • skip_pyobo (bool) – If true, skips prefixes that are ontologized as sources in PyOBO

  • skip_set (Optional[set[str]]) – An enumerated set of prefixes to skip