# -*- coding: utf-8 -*-
"""High-level API for typedefs."""
import logging
from functools import lru_cache
import pandas as pd
from .utils import get_version
from ..getters import get_ontology
from ..identifier_utils import wrap_norm_prefix
from ..utils.cache import cached_df
from ..utils.path import prefix_cache_join
__all__ = [
"get_typedef_df",
]
logger = logging.getLogger(__name__)
[docs]@lru_cache()
@wrap_norm_prefix
def get_typedef_df(prefix: str, force: bool = False) -> pd.DataFrame:
"""Get an identifier to name mapping for the typedefs in an OBO file."""
version = get_version(prefix)
path = prefix_cache_join(prefix, name="typedefs.tsv", version=version)
@cached_df(path=path, dtype=str, force=force)
def _df_getter() -> pd.DataFrame:
logger.debug("[%s] no cached typedefs found. getting from OBO loader", prefix)
ontology = get_ontology(prefix, force=force, version=version)
logger.debug("[%s] loading typedef mappings", prefix)
return ontology.get_typedef_df()
return _df_getter()