PyOBO 0.12.4 Documentation

Getting Started

• Installation
  • Installing from git
  • Installing for development
• Command Line Interface
  • pyobo
• Usage
  • Obo
  • Reference
  • Synonym
  • SynonymTypeDef
  • Term
  • TypeDef
  • default_reference()
  • ensure_path()
  • from_obo_path()
  • from_obonet()
  • get_alts_to_id()
  • get_ancestors()
  • get_children()
  • get_definition()
  • get_descendants()
  • get_edges()
  • get_edges_df()
  • get_filtered_properties_df()
  • get_filtered_properties_mapping()
  • get_filtered_properties_multimapping()
  • get_filtered_relations_df()
  • get_filtered_xrefs()
  • get_graph()
  • get_grounder()
  • get_hierarchy()
  • get_id_definition_mapping()
  • get_id_multirelations_mapping()
  • get_id_name_mapping()
  • get_id_species_mapping()
  • get_id_synonyms_mapping()
  • get_id_to_alts()
  • get_ids()
  • get_literal_mappings()
  • get_literal_mappings_df()
  • get_literal_mappings_subset()
  • get_literal_properties()
  • get_literal_properties_df()
  • get_mappings_df()
  • get_metadata()
  • get_name()
  • get_name_by_curie()
  • get_name_id_mapping()
  • get_object_properties()
  • get_object_properties_df()
  • get_obsolete()
  • get_ontology()
  • get_primary_curie()
  • get_primary_identifier()
  • get_properties()
  • get_properties_df()
  • get_property()
  • get_references()
  • get_relation()
  • get_relation_mapping()
  • get_relations_df()
  • get_species()
  • get_sssom_df()
  • get_subhierarchy()
  • get_synonyms()
  • get_typedef_df()
  • get_version()
  • get_xref()
  • get_xrefs()
  • get_xrefs_df()
  • ground()
  • has_ancestor()
  • has_nomenclature_plugin()
  • is_descendent()
  • iter_nomenclature_plugins()
  • run_nomenclature_plugin()
• Functional OWL
  • pyobo.struct.functional.dsl Module
  • pyobo.struct.functional.macros Module

Indices and Tables

• Index

• Module Index

• Search Page